% pubman genre = article @article{item_3387844, title = {{Population dynamics and genetic connectivity in recent chimpanzee history}}, author = {Fontsere, Claudia and Kuhlwilm, Martin and Morcillo-Suarez, Carlos and Alvarez-Estape, Marina and Lester, Jack D. and Gratton, Paolo and Schmidt, Joshua M. and Dieguez, Paula and Aebischer, Thierry and {\'A}lvarez-Varona, Paula and Agbor, Anthony and Angedakin, Samuel and Assumang, Alfred K. and Ayimisin, A. Emmanuel and Bailey, Emma and Barubiyo, Donatienne and Bessone, Mattia and Carretero-Alonso, Andrea and Chancellor, Rebecca and Cohen, Heather and Danquah, Emmanuel and Deschner, Tobias and Dunn, Andrew and Dupain, Jef and Egbe, Villard E. and Feliu, Olga and Goedmakers, Annemarie and Granjon, Anne-C{\'e}line and Head, Josephine S. and Hedwig, Daniela and Hermans, Veerle and Hernandez-Aguilar, R. Adriana and Imong, Inaoyom and Jones, Sorrel and Junker, Jessica and Kadam, Parag and Kaiser, Mike and Kambere, Mbangi and Vyalengerera, Magloire Kambale and Kalan, Ammie K. and Kienast, Ivonne and Kujirakwinja, Deo and Langergraber, Kevin and Lapuente, Juan and Larson, Bradley and Laudisoit, Anne and Lee, Kevin and Llana, Manuel and Llorente, Miquel and Marrocoli, Sergio and Morgan, David and Mulindahabi, Felix and Murai, Mizuki and Neil, Emily and Nicholl, Sonia and Nixon, Stuart and Normand, Emma and Orbell, Chris and Ormsby, Lucy Jayne and Pacheco, Liliana and Piel, Alex and Riera, Laura and Robbins, Martha M. and Rundus, Aaron and Sanz, Crickette and Sciaky, Lilah and Sommer, Volker and Stewart, Fiona A. and Tagg, Nikki and T{\'e}donzong, Luc Roscelin and Ton, Els and van Schijndel, Joost and Vergnes, Virginie and Wessling, Erin G. and Willie, Jacob and Wittig, Roman M. and Yuh, Yisa G. and Yurkiw, Kyle and Zuberbuehler, Klaus and Hecht, Jochen and Vigilant, Linda and Boesch, Christophe and Andr{\'e}s, Aida M. and Hughes, David A. and K{\"u}hl, Hjalmar S. and Lizano, Esther and Arandjelovic, Mimi and Marques-Bonet, Tomas}, language = {eng}, issn = {2666-979X}, doi = {10.1016/j.xgen.2022.100133}, publisher = {Elsevier}, address = {Amsterdam}, year = {2022}, abstract = {{Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees.}}, journal = {{Cell Genomics}}, volume = {2}, number = {6}, eid = {100133}, }